Papers
2025
ROMANO-BERTRAND, Sara, VIRIEUX-PETIT, Maxine, MAUFFREY, Florian, et al.
Defining a genomic threshold for investigating Pseudomonas aeruginosa hospital outbreak
Journal of Hospital Infection
MAUFFREY, Florian, BERTELLI Claire, GREUB Gilbert , et al.
Plasmids diversity of Serratia marcescens and Klebsiella pneumoniae isolates involved in two carbapenem-resistant Enterobacteriaceae outbreaks in a Swiss hospital
Microbiology Spectrum
BÉRARD, Alan, MAUFFREY, Florian, GAÏA, Nadia, et al.
Microbiota of Healthy Dental Pulp Under the Omics Loupe.International Journal of Molecular Sciences
LAZAREVIC, Vladimir, GAÏA, Nadia, PHAM, Truong-Thanh, et al.
Identification of causative agents of infective endocarditis by metagenomic next-generation sequencing of resected valves.
Frontiers in Cellular and Infection Microbiology
2024
MAUFFREY, Florian, PONCET, Fabrice, JACOT, Damien, et al.
Impact of mutations in the mtrR, rpdlVD and rrl genes on azithromycin resistance in Neisseria gonorrhoeae.
PloS one
MAUFFREY, Florian, BERTELLI, Claire, GREUB, Gilbert, et al.
Genomic evolution of ST228 SCCmec-I MRSA 10 years after a major nosocomial outbreak.
Journal of clinical microbiology
2023
DAMOUR, Géraldine, MAUFFREY, Florian, et HALL, Diana.
Identification and characterization of novel DIP-STRs from whole-genome sequencing data.
Forensic Science International: Genetics
MAUFFREY, Florian, GAÏA, Nadia, CHAABANE, Chiraz, et al.
Draft Genome Sequence of a Mixed-Serogroup W/Y Invasive Neisseria meningitidis Strain.
Microbiology Resource Announcements
2022
LAZAREVIC, Vladimir, GAÏA, Nadia, GIRARD, Myriam, et al.
Effect of bacterial DNA enrichment on detection and quantification of bacteria in an infected tissue model by metagenomic next-generation sequencing.
ISME communications
SIERRA, Roberto, MAUFFREY, Florian, CRUZ, Joana, et al.
Taxon-rich transcriptomics supports higher-level phylogeny and major evolutionary trends in Foraminifera.
Molecular Phylogenetics and Evolution
2021
MAUFFREY, Florian, CORDIER, Tristan, APOTHÉLOZ‐PERRET‐GENTIL, Laure, et al.
Benthic monitoring of oil and gas offshore platforms in the North Sea using environmental DNA metabarcoding.
Molecular Ecology
PAWLOWSKI, Jan, MAUFFREY, Florian, CORDIER, Tristan, et al.
Environmental genomics for benthic monitoring of North Sea oil and gas offshore platforms.
ARPHA Conference Abstracts
2020
LE GUILLOUZER, Servane, GROLEAU, Marie-Christine, MAUFFREY, Florian, et al.
ScmR, a global regulator of gene expression, quorum sensing, pH homeostasis, and virulence in Burkholderia thailandensis.
Journal of bacteriology
DESJARDINS, Michaël, LEFEBVRE, Brigitte, LAVALLÉE, Christian, et al.
Gradient diffusion susceptibility testing for Neisseria gonorrhoeae: an accurate alternative to agar dilution in high-MIC strains?
Access microbiology
2019
VILLEMUR, Richard, PAYETTE, Geneviève, GEOFFROY, Valérie, et al.
Dynamics of a methanol-fed marine denitrifying biofilm: 2—impact of environmental changes on the microbial community.
PeerJ
VILLEMUR, Richard, PAYETTE, Geneviève, GEOFFROY, Valérie, et al.
Impact of NaCl, nitrate and temperature on the microbial community of a methanol-fed, denitrifying marine biofilm.
bioRxiv
2018
GEOFFROY, Valérie, PAYETTE, Geneviève, MAUFFREY, Florian, et al.
Strain-level genetic diversity of Methylophaga nitratireducenticrescens confers plasticity to denitrification capacity in a methylotrophic marine denitrifying biofilm.
PeerJ
2017
MAUFFREY, Florian, FOURNIER, Éric, DEMCZUK, Walter, et al.
Comparison of sequential multiplex PCR, sequetyping and whole genome sequencing for serotyping of Streptococcus pneumoniae.
PLoS One
MAUFFREY, Florian, BACCARA, Pierre-Yves, GRUFFAZ, Christelle, et al.
Bacterial community composition and genes for herbicide degradation in a stormwater wetland collecting herbicide runoff.
Water, Air, & Soil Pollution
MAUFFREY, F., CUCAITA, A., CONSTANT, P., et al.
Denitrifying metabolism of the methylotrophic marine bacterium Methylophaga nitratireducenticrescens strain JAM1.
PeerJ
DESJARDINS, Michaël, LEFEBVRE, Brigitte, LABBÉ, Annie-Claude, et al.
Agar gradient diffusion susceptibility testing for Neisseria gonorrhoeae: a reliable alternative to agar dilution?
Open Forum Infectious Diseases
2015
MAUFFREY, Florian, MARTINEAU, Christine, et VILLEMUR, Richard.
Importance of the two dissimilatory (Nar) nitrate reductases in the growth and nitrate reduction of the methylotrophic marine bacterium Methylophaga nitratireducenticrescens JAM1.
Frontiers in microbiology
MARTINEAU, Christine, MAUFFREY, Florian, et VILLEMUR, Richard.
Comparative analysis of denitrifying activities of Hyphomicrobium nitrativorans, Hyphomicrobium denitrificans, and Hyphomicrobium zavarzinii.
Applied and Environmental Microbiology
2014
MARTINEAU, Christine, VILLENEUVE, Céline, MAUFFREY, Florian, et al.
Complete genome sequence of Hyphomicrobium nitrativorans strain NL23, a denitrifying bacterium isolated from biofilm of a methanol-fed denitrification system treating seawater at the Montreal Biodome.
Genome announcements
2013
MARTINEAU, Christine, VILLENEUVE, Céline, MAUFFREY, Florian, et al.
Hyphomicrobium nitrativorans sp. nov., isolated from the biofilm of a methanol-fed denitrification system treating seawater at the Montreal Biodome.
International Journal of Systematic and Evolutionary Microbiology
VILLENEUVE, Céline, MARTINEAU, Christine, MAUFFREY, Florian, et al.
Methylophaga nitratireducenticrescens sp. nov. and Methylophaga frappieri sp. nov., isolated from the biofilm of the methanol-fed denitrification system treating the seawater at the Montreal Biodome.
International Journal of Systematic and Evolutionary Microbiology
2012
VILLENEUVE, Céline, MARTINEAU, Christine, MAUFFREY, Florian, et al.
Complete genome sequences of Methylophaga sp. strain JAM1 and Methylophaga sp. strain JAM7. 2012.
Journal of Bacteriology